Index

Symbols

--credentials sl-configure-google command line option --directory sl-configure-directory command line option --experiment sl-configure-experiment command line option --gas_puff_count sl-configure-experiment command line option --host sl-configure-server command line option --password sl-configure-server command line option --project sl-configure-experiment command line option sl-configure-project command line option --shared-directory sl-configure-server command line option --state_count sl-configure-experiment command line option --storage-root sl-configure-server command line option --system sl-configure-system command line option --username sl-configure-server command line option --water_reward_count sl-configure-experiment command line option --working-root sl-configure-server command line option

-c sl-configure-google command line option -d sl-configure-directory command line option -e sl-configure-experiment command line option -gc sl-configure-experiment command line option -h sl-configure-server command line option -p sl-configure-experiment command line option sl-configure-project command line option sl-configure-server command line option -s sl-configure-system command line option -sc sl-configure-experiment command line option -sd sl-configure-server command line option -sr sl-configure-server command line option -u sl-configure-server command line option -wc sl-configure-experiment command line option -wr sl-configure-server command line option

A

acquisition_system (sl_shared_assets.data_classes.DatasetData attribute) (sl_shared_assets.data_classes.SessionData attribute) AcquisitionSystems (class in sl_shared_assets.data_classes) actor_port (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) ADOPTION (sl_shared_assets.data_classes.ProcessingPipelines attribute) animal (sl_shared_assets.data_classes.SessionMetadata attribute)

animal_id (sl_shared_assets.data_classes.SessionData attribute) animals (sl_shared_assets.data_classes.DatasetData property) assets (sl_shared_assets.data_classes.MesoscopeSystemConfiguration attribute) aversive_initial_guided_trials (sl_shared_assets.data_classes.MesoscopeExperimentState attribute) aversive_recovery_failed_threshold (sl_shared_assets.data_classes.MesoscopeExperimentState attribute) aversive_recovery_guided_trials (sl_shared_assets.data_classes.MesoscopeExperimentState attribute)

B

BEHAVIOR (sl_shared_assets.data_classes.ProcessingPipelines attribute) (sl_shared_assets.data_classes.ProcessingTrackers attribute) behavior_data_path (sl_shared_assets.data_classes.ProcessedData attribute) (sl_shared_assets.data_classes.RawData attribute)

body_camera_index (sl_shared_assets.data_classes.MesoscopeCameras attribute) body_camera_preset (sl_shared_assets.data_classes.MesoscopeCameras attribute) body_camera_quantization (sl_shared_assets.data_classes.MesoscopeCameras attribute) buprenorphine_code (sl_shared_assets.data_classes.DrugData attribute) buprenorphine_volume_ml (sl_shared_assets.data_classes.DrugData attribute)

C

cage (sl_shared_assets.data_classes.SubjectData attribute) calculate_directory_checksum() (in module sl_shared_assets.data_transfer) camera_data_path (sl_shared_assets.data_classes.ProcessedData attribute) (sl_shared_assets.data_classes.RawData attribute) cameras (sl_shared_assets.data_classes.MesoscopeSystemConfiguration attribute) CHECKSUM (sl_shared_assets.data_classes.ManagingTrackers attribute) (sl_shared_assets.data_classes.ProcessingPipelines attribute) checksum_path (sl_shared_assets.data_classes.RawData attribute) cm_per_pulse (sl_shared_assets.data_classes.MesoscopeHardwareState attribute) cm_per_unity_unit (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) (sl_shared_assets.data_classes.VREnvironment attribute)

code (sl_shared_assets.data_classes.Cue attribute) complete (sl_shared_assets.data_classes.ProcessingTracker property) complete_job() (sl_shared_assets.data_classes.ProcessingTracker method) corridor_spacing_cm (sl_shared_assets.data_classes.VREnvironment attribute) create() (sl_shared_assets.data_classes.DatasetData class method) (sl_shared_assets.data_classes.SessionData class method) create_server_configuration_file() (in module sl_shared_assets.data_classes) create_system_configuration_file() (in module sl_shared_assets.data_classes) Cue (class in sl_shared_assets.data_classes) cue_offset_cm (sl_shared_assets.data_classes.MesoscopeExperimentConfiguration attribute) cue_sequence (sl_shared_assets.data_classes.Segment attribute) cues (sl_shared_assets.data_classes.MesoscopeExperimentConfiguration attribute)

D

data (sl_shared_assets.data_classes.DatasetSessionData attribute) data_path (sl_shared_assets.data_classes.DatasetSessionData attribute) dataset_data_path (sl_shared_assets.data_classes.DatasetData attribute) DatasetData (class in sl_shared_assets.data_classes) DatasetSessionData (class in sl_shared_assets.data_classes) DatasetTrackers (class in sl_shared_assets.data_classes) DatasetTrackingData (class in sl_shared_assets.data_classes) date_of_birth_us (sl_shared_assets.data_classes.SubjectData attribute)

delete_directory() (in module sl_shared_assets.data_transfer) delivered_gas_puffs (sl_shared_assets.data_classes.MesoscopeHardwareState attribute) dexamethasone_code (sl_shared_assets.data_classes.DrugData attribute) dexamethasone_volume_ml (sl_shared_assets.data_classes.DrugData attribute) dispensed_water_volume_ml (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.MesoscopeExperimentDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) DrugData (class in sl_shared_assets.data_classes) drugs (sl_shared_assets.data_classes.SurgeryData attribute)

E

ear_punch (sl_shared_assets.data_classes.SubjectData attribute) encoder_port (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) encountered_error (sl_shared_assets.data_classes.ProcessingTracker property) experiment_configuration_path (sl_shared_assets.data_classes.RawData attribute) experiment_name (sl_shared_assets.data_classes.SessionData attribute) experiment_state_code (sl_shared_assets.data_classes.MesoscopeExperimentState attribute) experiment_states (sl_shared_assets.data_classes.MesoscopeExperimentConfiguration attribute) experimenter (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.MesoscopeExperimentDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) (sl_shared_assets.data_classes.WindowCheckingDescriptor attribute)

experimenter_given_water_volume_ml (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.MesoscopeExperimentDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) experimenter_notes (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.MesoscopeExperimentDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) (sl_shared_assets.data_classes.WindowCheckingDescriptor attribute)

F

face_camera_index (sl_shared_assets.data_classes.MesoscopeCameras attribute) face_camera_preset (sl_shared_assets.data_classes.MesoscopeCameras attribute) face_camera_quantization (sl_shared_assets.data_classes.MesoscopeCameras attribute) fail_job() (sl_shared_assets.data_classes.ProcessingTracker method) FAILED (sl_shared_assets.data_classes.ProcessingStatus attribute)

file_path (sl_shared_assets.data_classes.ProcessingTracker attribute) filesystem (sl_shared_assets.data_classes.MesoscopeSystemConfiguration attribute) final_run_duration_threshold_s (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) final_run_speed_threshold_cm_s (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) FORGING (sl_shared_assets.data_classes.DatasetTrackers attribute) (sl_shared_assets.data_classes.ProcessingPipelines attribute)

G

GasPuffTrial (class in sl_shared_assets.data_classes) generate_job_id() (sl_shared_assets.data_classes.ProcessingTracker static method) genotype (sl_shared_assets.data_classes.SubjectData attribute) get_google_credentials_path() (in module sl_shared_assets.data_classes) get_job_status() (sl_shared_assets.data_classes.ProcessingTracker method)

get_server_configuration() (in module sl_shared_assets.data_classes) get_session_data() (sl_shared_assets.data_classes.DatasetData method) get_sessions_for_animal() (sl_shared_assets.data_classes.DatasetData method) get_system_configuration_data() (in module sl_shared_assets.data_classes) get_working_directory() (in module sl_shared_assets.data_classes)

H

hardware_state_path (sl_shared_assets.data_classes.RawData attribute) headbar_pitch (sl_shared_assets.data_classes.ZaberPositions attribute) headbar_port (sl_shared_assets.data_classes.MesoscopeExternalAssets attribute)

headbar_roll (sl_shared_assets.data_classes.ZaberPositions attribute) headbar_z (sl_shared_assets.data_classes.ZaberPositions attribute) host (sl_shared_assets.data_classes.ServerConfiguration attribute)

I

id (sl_shared_assets.data_classes.SubjectData attribute) implant (sl_shared_assets.data_classes.ImplantData attribute) implant_ap_coordinate_mm (sl_shared_assets.data_classes.ImplantData attribute) implant_code (sl_shared_assets.data_classes.ImplantData attribute) implant_dv_coordinate_mm (sl_shared_assets.data_classes.ImplantData attribute) implant_ml_coordinate_mm (sl_shared_assets.data_classes.ImplantData attribute) implant_target (sl_shared_assets.data_classes.ImplantData attribute) ImplantData (class in sl_shared_assets.data_classes) implants (sl_shared_assets.data_classes.SurgeryData attribute) incomplete (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.MesoscopeExperimentDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) (sl_shared_assets.data_classes.WindowCheckingDescriptor attribute)

increase_threshold_ml (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) initial_run_duration_threshold_s (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) initial_run_speed_threshold_cm_s (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) initialize_jobs() (sl_shared_assets.data_classes.ProcessingTracker method) injection (sl_shared_assets.data_classes.InjectionData attribute) injection_ap_coordinate_mm (sl_shared_assets.data_classes.InjectionData attribute) injection_code (sl_shared_assets.data_classes.InjectionData attribute) injection_dv_coordinate_mm (sl_shared_assets.data_classes.InjectionData attribute) injection_ml_coordinate_mm (sl_shared_assets.data_classes.InjectionData attribute) injection_target (sl_shared_assets.data_classes.InjectionData attribute) injection_volume_nl (sl_shared_assets.data_classes.InjectionData attribute) InjectionData (class in sl_shared_assets.data_classes) injections (sl_shared_assets.data_classes.SurgeryData attribute)

J

jobs (sl_shared_assets.data_classes.ProcessingTracker attribute)

K

keepalive_interval_ms (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute)

ketoprofen_code (sl_shared_assets.data_classes.DrugData attribute) ketoprofen_volume_ml (sl_shared_assets.data_classes.DrugData attribute)

L

lactated_ringers_solution_code (sl_shared_assets.data_classes.DrugData attribute) lactated_ringers_solution_volume_ml (sl_shared_assets.data_classes.DrugData attribute) laser_power_mw (sl_shared_assets.data_classes.MesoscopePositions attribute) length_cm (sl_shared_assets.data_classes.Cue attribute) lick_averaging_pool_size (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) lick_delta_threshold_adc (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) lick_signal_threshold_adc (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) lick_threshold (sl_shared_assets.data_classes.MesoscopeHardwareState attribute) lick_threshold_adc (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) LICK_TRAINING (sl_shared_assets.data_classes.SessionTypes attribute)

lickport_port (sl_shared_assets.data_classes.MesoscopeExternalAssets attribute) lickport_x (sl_shared_assets.data_classes.ZaberPositions attribute) lickport_y (sl_shared_assets.data_classes.ZaberPositions attribute) lickport_z (sl_shared_assets.data_classes.ZaberPositions attribute) LickTrainingDescriptor (class in sl_shared_assets.data_classes) load() (sl_shared_assets.data_classes.DatasetData class method) (sl_shared_assets.data_classes.SessionData class method) load_data() (sl_shared_assets.data_classes.DatasetSessionData method) location_housed (sl_shared_assets.data_classes.SubjectData attribute) lock_path (sl_shared_assets.data_classes.ProcessingTracker attribute)

M

make_directories() (sl_shared_assets.data_classes.DatasetSessionData method) (sl_shared_assets.data_classes.DatasetTrackingData method) (sl_shared_assets.data_classes.ProcessedData method) (sl_shared_assets.data_classes.RawData method) (sl_shared_assets.data_classes.TrackingData method) ManagingTrackers (class in sl_shared_assets.data_classes) MANIFEST (sl_shared_assets.data_classes.ManagingTrackers attribute) (sl_shared_assets.data_classes.ProcessingPipelines attribute) maximum_brake_strength (sl_shared_assets.data_classes.MesoscopeHardwareState attribute) maximum_brake_strength_g_cm (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) maximum_idle_time_s (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) maximum_reward_delay_s (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) maximum_training_time_min (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) maximum_unconsumed_rewards (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.MesoscopeExperimentDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) maximum_water_volume_ml (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) mesoscope_data_path (sl_shared_assets.data_classes.ProcessedData attribute) (sl_shared_assets.data_classes.RawData attribute) mesoscope_directory (sl_shared_assets.data_classes.MesoscopeFileSystem attribute) MESOSCOPE_EXPERIMENT (sl_shared_assets.data_classes.SessionTypes attribute) mesoscope_fast_z (sl_shared_assets.data_classes.MesoscopePositions attribute) mesoscope_frame_averaging_pool_size (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) mesoscope_positions_path (sl_shared_assets.data_classes.RawData attribute) mesoscope_roll (sl_shared_assets.data_classes.MesoscopePositions attribute) mesoscope_tilt (sl_shared_assets.data_classes.MesoscopePositions attribute) mesoscope_tip (sl_shared_assets.data_classes.MesoscopePositions attribute)

MESOSCOPE_VR (sl_shared_assets.data_classes.AcquisitionSystems attribute) mesoscope_x (sl_shared_assets.data_classes.MesoscopePositions attribute) mesoscope_y (sl_shared_assets.data_classes.MesoscopePositions attribute) mesoscope_z (sl_shared_assets.data_classes.MesoscopePositions attribute) MesoscopeCameras (class in sl_shared_assets.data_classes) MesoscopeExperimentConfiguration (class in sl_shared_assets.data_classes) MesoscopeExperimentDescriptor (class in sl_shared_assets.data_classes) MesoscopeExperimentState (class in sl_shared_assets.data_classes) MesoscopeExternalAssets (class in sl_shared_assets.data_classes) MesoscopeFileSystem (class in sl_shared_assets.data_classes) MesoscopeGoogleSheets (class in sl_shared_assets.data_classes) MesoscopeHardwareState (class in sl_shared_assets.data_classes) MesoscopeMicroControllers (class in sl_shared_assets.data_classes) MesoscopePositions (class in sl_shared_assets.data_classes) MesoscopeSystemConfiguration (class in sl_shared_assets.data_classes) metadata (sl_shared_assets.data_classes.DatasetSessionData attribute) metadata_path (sl_shared_assets.data_classes.DatasetSessionData attribute) microcontrollers (sl_shared_assets.data_classes.MesoscopeSystemConfiguration attribute) minimum_brake_strength (sl_shared_assets.data_classes.MesoscopeHardwareState attribute) minimum_brake_strength_g_cm (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) minimum_reward_delay_s (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) module sl_shared_assets.data_classes sl_shared_assets.data_transfer mouse_weight_g (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.MesoscopeExperimentDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) MULTIDAY (sl_shared_assets.data_classes.DatasetTrackers attribute) (sl_shared_assets.data_classes.ProcessingPipelines attribute)

N

name (sl_shared_assets.data_classes.Cue attribute) (sl_shared_assets.data_classes.DatasetData attribute) (sl_shared_assets.data_classes.MesoscopeSystemConfiguration attribute) (sl_shared_assets.data_classes.Segment attribute)

nas_directory (sl_shared_assets.data_classes.MesoscopeFileSystem attribute) nk_path (sl_shared_assets.data_classes.RawData attribute)

O

occupancy_duration_ms (sl_shared_assets.data_classes.GasPuffTrial attribute)

P

padding_prefab_name (sl_shared_assets.data_classes.VREnvironment attribute) password (sl_shared_assets.data_classes.ServerConfiguration attribute) pause_dispensed_water_volume_ml (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.MesoscopeExperimentDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) post_op_notes (sl_shared_assets.data_classes.ProcedureData attribute) preferred_session_water_volume_ml (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.MesoscopeExperimentDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) procedure (sl_shared_assets.data_classes.SurgeryData attribute) ProcedureData (class in sl_shared_assets.data_classes)

processed_data (sl_shared_assets.data_classes.SessionData attribute) processed_data_path (sl_shared_assets.data_classes.ProcessedData attribute) ProcessedData (class in sl_shared_assets.data_classes) ProcessingPipelines (class in sl_shared_assets.data_classes) ProcessingStatus (class in sl_shared_assets.data_classes) ProcessingTracker (class in sl_shared_assets.data_classes) ProcessingTrackers (class in sl_shared_assets.data_classes) project (sl_shared_assets.data_classes.DatasetData attribute) project_name (sl_shared_assets.data_classes.SessionData attribute) protocol (sl_shared_assets.data_classes.ProcedureData attribute) puff_duration_ms (sl_shared_assets.data_classes.GasPuffTrial attribute) python_version (sl_shared_assets.data_classes.SessionData attribute)

R

raw_data (sl_shared_assets.data_classes.SessionData attribute) raw_data_path (sl_shared_assets.data_classes.RawData attribute) RawData (class in sl_shared_assets.data_classes) recorded_mesoscope_ttl (sl_shared_assets.data_classes.MesoscopeHardwareState attribute) red_dot_alignment_z (sl_shared_assets.data_classes.MesoscopePositions attribute) reinforcing_initial_guided_trials (sl_shared_assets.data_classes.MesoscopeExperimentState attribute) reinforcing_recovery_failed_threshold (sl_shared_assets.data_classes.MesoscopeExperimentState attribute) reinforcing_recovery_guided_trials (sl_shared_assets.data_classes.MesoscopeExperimentState attribute) release_data() (sl_shared_assets.data_classes.DatasetSessionData method) reset() (sl_shared_assets.data_classes.ProcessingTracker method) resolve_paths() (sl_shared_assets.data_classes.DatasetSessionData method) (sl_shared_assets.data_classes.DatasetTrackingData method) (sl_shared_assets.data_classes.ProcessedData method) (sl_shared_assets.data_classes.RawData method) (sl_shared_assets.data_classes.TrackingData method)

reward_size_ul (sl_shared_assets.data_classes.WaterRewardTrial attribute) reward_tone_duration_ms (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) (sl_shared_assets.data_classes.WaterRewardTrial attribute) root_directory (sl_shared_assets.data_classes.MesoscopeFileSystem attribute) run_duration_increase_step_s (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) run_speed_increase_step_cm_s (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) RUN_TRAINING (sl_shared_assets.data_classes.SessionTypes attribute) RUNNING (sl_shared_assets.data_classes.ProcessingStatus attribute) runtime_initialized() (sl_shared_assets.data_classes.SessionData method) RunTrainingDescriptor (class in sl_shared_assets.data_classes)

S

save() (sl_shared_assets.data_classes.DatasetData method) (sl_shared_assets.data_classes.MesoscopeSystemConfiguration method) (sl_shared_assets.data_classes.SessionData method) SCHEDULED (sl_shared_assets.data_classes.ProcessingStatus attribute) screen_trigger_pulse_duration_ms (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) screens_initially_on (sl_shared_assets.data_classes.MesoscopeHardwareState attribute) Segment (class in sl_shared_assets.data_classes) segments (sl_shared_assets.data_classes.MesoscopeExperimentConfiguration attribute) segments_per_corridor (sl_shared_assets.data_classes.VREnvironment attribute) sensor_polling_delay_ms (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) sensor_port (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) server_directory (sl_shared_assets.data_classes.MesoscopeFileSystem attribute) ServerConfiguration (class in sl_shared_assets.data_classes) session (sl_shared_assets.data_classes.SessionMetadata attribute) session_data_path (sl_shared_assets.data_classes.RawData attribute) session_descriptor_path (sl_shared_assets.data_classes.RawData attribute) session_name (sl_shared_assets.data_classes.SessionData attribute) session_path (sl_shared_assets.data_classes.DatasetSessionData attribute) session_type (sl_shared_assets.data_classes.DatasetData attribute) (sl_shared_assets.data_classes.SessionData attribute) SessionData (class in sl_shared_assets.data_classes) SessionMetadata (class in sl_shared_assets.data_classes) sessions (sl_shared_assets.data_classes.DatasetData attribute) SessionTypes (class in sl_shared_assets.data_classes) set_google_credentials_path() (in module sl_shared_assets.data_classes) set_working_directory() (in module sl_shared_assets.data_classes) sex (sl_shared_assets.data_classes.SubjectData attribute) shared_directory_name (sl_shared_assets.data_classes.ServerConfiguration attribute) shared_storage_root (sl_shared_assets.data_classes.ServerConfiguration attribute) shared_working_root (sl_shared_assets.data_classes.ServerConfiguration attribute) sheets (sl_shared_assets.data_classes.MesoscopeSystemConfiguration attribute) sl-configure-directory command line option --directory -d sl-configure-experiment command line option --experiment --gas_puff_count --project --state_count --water_reward_count -e -gc -p -sc -wc sl-configure-google command line option --credentials -c

sl-configure-project command line option --project -p sl-configure-server command line option --host --password --shared-directory --storage-root --username --working-root -h -p -sd -sr -u -wr sl-configure-system command line option --system -s sl_experiment_version (sl_shared_assets.data_classes.SessionData attribute) sl_shared_assets.data_classes module sl_shared_assets.data_transfer module start_job() (sl_shared_assets.data_classes.ProcessingTracker method) state_duration_s (sl_shared_assets.data_classes.MesoscopeExperimentState attribute) status (sl_shared_assets.data_classes.SubjectData attribute) storage_root (sl_shared_assets.data_classes.ServerConfiguration attribute) subject (sl_shared_assets.data_classes.SurgeryData attribute) SubjectData (class in sl_shared_assets.data_classes) SUCCEEDED (sl_shared_assets.data_classes.ProcessingStatus attribute) SUITE2P (sl_shared_assets.data_classes.ProcessingPipelines attribute) (sl_shared_assets.data_classes.ProcessingTrackers attribute) supports_trials (sl_shared_assets.data_classes.MesoscopeExperimentState attribute) surgeon (sl_shared_assets.data_classes.ProcedureData attribute) surgery_end_us (sl_shared_assets.data_classes.ProcedureData attribute) surgery_metadata_path (sl_shared_assets.data_classes.RawData attribute) surgery_notes (sl_shared_assets.data_classes.ProcedureData attribute) surgery_quality (sl_shared_assets.data_classes.ProcedureData attribute) (sl_shared_assets.data_classes.WindowCheckingDescriptor attribute) surgery_sheet_id (sl_shared_assets.data_classes.MesoscopeGoogleSheets attribute) surgery_start_us (sl_shared_assets.data_classes.ProcedureData attribute) SurgeryData (class in sl_shared_assets.data_classes) system_configuration_path (sl_shared_assets.data_classes.RawData attribute) system_state_code (sl_shared_assets.data_classes.MesoscopeExperimentState attribute) system_state_codes (sl_shared_assets.data_classes.MesoscopeHardwareState attribute)

T

torque_averaging_pool_size (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) torque_baseline_voltage_adc (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) torque_delta_threshold_adc (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) torque_maximum_voltage_adc (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) torque_per_adc_unit (sl_shared_assets.data_classes.MesoscopeHardwareState attribute) torque_report_ccw (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) torque_report_cw (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) torque_sensor_capacity_g_cm (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute)

torque_signal_threshold_adc (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) tracking_data (sl_shared_assets.data_classes.DatasetData attribute) (sl_shared_assets.data_classes.SessionData attribute) tracking_data_path (sl_shared_assets.data_classes.DatasetTrackingData attribute) (sl_shared_assets.data_classes.TrackingData attribute) TrackingData (class in sl_shared_assets.data_classes) transfer_directory() (in module sl_shared_assets.data_transfer) transition_probabilities (sl_shared_assets.data_classes.Segment attribute) trial_structures (sl_shared_assets.data_classes.MesoscopeExperimentConfiguration attribute)

U

unity_ip (sl_shared_assets.data_classes.MesoscopeExternalAssets attribute) unity_port (sl_shared_assets.data_classes.MesoscopeExternalAssets attribute) unity_scene_name (sl_shared_assets.data_classes.MesoscopeExperimentConfiguration attribute)

user_data_root (sl_shared_assets.data_classes.ServerConfiguration attribute) user_working_root (sl_shared_assets.data_classes.ServerConfiguration attribute) username (sl_shared_assets.data_classes.ServerConfiguration attribute)

V

valve_calibration_data (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) valve_nonlinearity_exponent (sl_shared_assets.data_classes.MesoscopeHardwareState attribute) valve_scale_coefficient (sl_shared_assets.data_classes.MesoscopeHardwareState attribute)

VIDEO (sl_shared_assets.data_classes.ProcessingPipelines attribute) (sl_shared_assets.data_classes.ProcessingTrackers attribute) vr_environment (sl_shared_assets.data_classes.MesoscopeExperimentConfiguration attribute) VREnvironment (class in sl_shared_assets.data_classes)

W

water_log_sheet_id (sl_shared_assets.data_classes.MesoscopeGoogleSheets attribute) water_reward_size_ul (sl_shared_assets.data_classes.LickTrainingDescriptor attribute) (sl_shared_assets.data_classes.RunTrainingDescriptor attribute) WaterRewardTrial (class in sl_shared_assets.data_classes) weight_g (sl_shared_assets.data_classes.SubjectData attribute) wheel_diameter_cm (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) wheel_encoder_delta_threshold_pulse (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) wheel_encoder_polling_delay_us (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute)

wheel_encoder_ppr (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) wheel_encoder_report_ccw (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) wheel_encoder_report_cw (sl_shared_assets.data_classes.MesoscopeMicroControllers attribute) wheel_port (sl_shared_assets.data_classes.MesoscopeExternalAssets attribute) wheel_x (sl_shared_assets.data_classes.ZaberPositions attribute) WINDOW_CHECKING (sl_shared_assets.data_classes.SessionTypes attribute) window_screenshot_path (sl_shared_assets.data_classes.RawData attribute) WindowCheckingDescriptor (class in sl_shared_assets.data_classes) working_root (sl_shared_assets.data_classes.ServerConfiguration attribute)

Z

zaber_positions_path (sl_shared_assets.data_classes.RawData attribute)

ZaberPositions (class in sl_shared_assets.data_classes)